PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_985BB33A1.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 27747.2 Da    PI: 10.6908
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_985BB33A1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.2e-3193143151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                            krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+
  Traes_1AS_985BB33A1.2  93 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 143
                            79***********************************************95 PP

2K-box88.41.4e-29160244387
                  K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                            +ss   ++e +a+++qqe+akLk++i +Lq+++R l+G+ + ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++ +++
  Traes_1AS_985BB33A1.2 160 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNRTLIGDTMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRVRNT 244
                            4455559999***********************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.54385145IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-4185144IPR002100Transcription factor, MADS-box
CDDcd002651.27E-4286162No hitNo description
SuperFamilySSF554551.83E-3286157IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-3287107IPR002100Transcription factor, MADS-box
PROSITE patternPS00350087141IPR002100Transcription factor, MADS-box
PfamPF003192.0E-2694141IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-32107122IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-32122143IPR002100Transcription factor, MADS-box
PfamPF014861.6E-21170244IPR002487Transcription factor, K-box
PROSITE profilePS5129711.823171247IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MATTGWGNSR YARRGRDSAR GSGAYSLRKP QRERHHQGEE MDHSLSFSSY LQRRVQEVAA  60
QENRVKESAS PGSGSGSAGG AAEKMGRGRI EIKRIENTTN RQVTFCKRRN GLLKKAYELS  120
VLCDAEVALI VFSGRGRLYE YSNNSVKATI ERYKKATSDT SSAGTVAEIN AQHYQQESAK  180
LKQQITTLQN SNRTLIGDTM ATMSHRDLKQ LEGRLDKGLG KIRARKNELL CAEIEYMQRR  240
VRNTIKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S2e-2085153169Myocyte-specific enhancer factor 2B
1tqe_R2e-2085153169Myocyte-specific enhancer factor 2B
1tqe_Q2e-2085153169Myocyte-specific enhancer factor 2B
1tqe_P2e-2085153169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0089570.0BT008957.1 Triticum aestivum clone wdk1c.pk011.o20:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230317.11e-136PREDICTED: MADS-box transcription factor 58-like isoform X1
SwissprotQ2V0P11e-101MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLW4ZXF70.0W4ZXF7_WHEAT; Uncharacterized protein
STRINGMLOC_57700.11e-116(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]